PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.B89MP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 493aa    MW: 56839.1 Da    PI: 6.8513
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.B89MPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.3e-1859145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.B89MP  59 KFYRNYAKAAGFSTRVRSTNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 145
                  6****************98887..7779*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-1659145IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.679308344IPR007527Zinc finger, SWIM-type
SMARTSM005750.0064319346IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEFLTW CILQPLSVVD DQFIPKVGMT FTTLEDAGKF  60
YRNYAKAAGF STRVRSTNRK ENEIKNQLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY  120
IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE ADLYEDCHIW  180
VPIYLDHHFW TGMRSTQRSE SMHSFFNKFI TRNSSLIQFV KQYDNCLGSR EQVERESDAA  240
DFHTVIPCTT KSSIEAQFQD VYTHQKFREV QAQFRGKANC ITRLTNSALG YSVYEVGEQV  300
FSLIFNKFVV TYDSVAAEVK CQCLLFESRW ILCRHALSVL SFERVSQVSP RYILERWSKK  360
VKRRHTHIKS SHDEPLLEPR SKRFDQLVFR SQNICEFASE SEELTVILHR AYDNVMVEME  420
SLKAKRKGTS SLSHEDANLE SVNELQSPKG FEQEDLNLFD AASVVHSNSS QYQARVMNYQ  480
FRVPAAADNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.B89MP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-31far-red elongated hypocotyls 3