PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.B8XSH

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ZF-HD

Protein Properties

Length: 220aa MW: 24207.7 Da PI: 6.6243

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.B8XSH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.5	1.2e-31	68	122	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAa++Gg+a+DGCgEfmps g++gt++al+C+AC CHRnFHR+e + Araip.B8XSH 68 VRYRECLKNHAAAMGGNATDGCGEFMPS-GDHGTMEALTCSACRCHRNFHRKEIQG 122 89***********************9.889******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-24	68	126	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.1E-28	68	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-29	69	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.049	70	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MELSSQEGDI PIAVNTTANY GGNGHGAHIN IHHTQNPSNG SSMHPLDNGP YNSKQEEEEE 60 EEVVVPLVRY RECLKNHAAA MGGNATDGCG EFMPSGDHGT MEALTCSACR CHRNFHRKEI 120 QGEPSAPPPP LLEYHHHHFN TATRHLAASR KFLHKNMHHH HHLGYPTAGG GNILPSRTVP 180 PAQMIMPYNI GPMPSSEHSD EQDERVKTAT RLESNAESSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.B8XSH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025614184.1	1e-155	zinc-finger homeodomain protein 4
Refseq	XP_025629669.1	1e-155	zinc-finger homeodomain protein 4
TrEMBL	A0A445AYH0	1e-153	A0A445AYH0_ARAHY; Uncharacterized protein
STRING	GLYMA07G40190.1	1e-51	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	1e-32	homeobox protein 31