PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.BC8Z8

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 186aa MW: 21180.3 Da PI: 6.3983

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.BC8Z8	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.3e-09	52	100	3	48
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 WT +E e++ +++q ++ +W+++a++++ g+t+ q+++r+qk+l Araip.BC8Z8 52 IWTRDENEQFEIVIAQCFMEaienRWEAVAARLP-GKTPAQLQERFQKLL 100 6***************99**********.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.86E-8	43	106	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.909	45	100	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.4E-7	46	101	IPR009057	Homeodomain-like
SMART	SM00717	8.8E-5	49	102	IPR001005	SANT/Myb domain
CDD	cd00167	1.23E-7	53	100	No hit	No description
Pfam	PF00249	4.5E-6	53	100	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSAKEVKNAR MSEEELDTLL MMDMEKIIEL FADDTGGNQP PQFQSPPLPR PIWTRDENEQ 60 FEIVIAQCFM EAIENRWEAV AARLPGKTPA QLQERFQKLL NDISLIQNGY LVNIHDSSII 120 NGTIPPPIYW THHHHHRTEV VEAAANKAAP MEIILSSSAM DAKSNIISHK PLSMATRKNN 180 KRKIIF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.BC8Z8

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016169131.2	1e-135	uncharacterized protein LOC107611750
TrEMBL	A0A444XWZ1	1e-134	A0A444XWZ1_ARAHY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-08	MYB family protein