PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BL2WM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 134aa    MW: 15498 Da    PI: 9.1122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BL2WMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-18757656
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++t+  l  Lee F+++ ++++++++ LAk+l+L+ rqV vWFqNrRa+ k
  Araip.BL2WM  7 CITSLTLALLEENFKNHTTLNQAQKQALAKQLNLKHRQVEVWFQNRRARTK 57
                 67888999*****************************************98 PP
2HD-ZIP_I/II1041.2e-33991790
  HD-ZIP_I/II  7 skeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                 ++  ++lLEe+F+++++L++ +K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eLr +
  Araip.BL2WM  9 TSLTLALLEENFKNHTTLNQAQKQALAKQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLTDENLRLKKELQELR-A 91
                 5556789**************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.1E-11163IPR001356Homeobox domain
PROSITE profilePS5007115.645159IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-16657IPR009057Homeodomain-like
PfamPF000464.8E-16757IPR001356Homeobox domain
CDDcd000866.85E-11860No hitNo description
SuperFamilySSF466891.07E-15867IPR009057Homeodomain-like
PROSITE patternPS0002703457IPR017970Homeobox, conserved site
PfamPF021837.7E-105992IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.0E-2059102IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEDEKACITS LTLALLEENF KNHTTLNQAQ KQALAKQLNL KHRQVEVWFQ NRRARTKLKQ  60
TEVDCEFLKK CCERLTDENL RLKKELQELR AIKAGPTQSP TPPLYIQLLS SKSSPLTICS  120
SCEELLKKTK QENI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BL2WM
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311726e-67KT031172.1 Glycine max clone HN_CCL_117 homeodomain/HOMEOBOX transcription factor (Glyma15g18320.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193404.12e-80homeobox-leucine zipper protein HOX19
RefseqXP_025644324.12e-80homeobox-leucine zipper protein HOX19
SwissprotA2XE762e-44HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL42e-44HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A445A2D74e-79A0A445A2D7_ARAHY; Uncharacterized protein
STRINGGLYMA09G07051.14e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-34HD-ZIP family protein