PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BP58N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 496aa    MW: 56992.9 Da    PI: 9.2565
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BP58NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.29.9e-1751137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +C++e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H ++p
  Araip.BP58N  51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCNREEKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHLCCP 137
                  6****************98887..8889***********99998776...8999**************998879**************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-1451137IPR004330FAR1 DNA binding domain
PfamPF044344.9E-5280313IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.161280316IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4291318IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPELLSV IDDQFVPKVG MTFTTIEDAG KFYRNYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCNREEKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHLCCPSKA KMLKQHRELS MSIRRTVENN EEAGMRSTQR SESMHSFFNK  180
FITRNSSLIQ FVKQYDNCLR SREQAERESD AADFYTVISC ATKFSIEAQF QDVYTHQKFR  240
EVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSSLIFNKF VVTYDLVAVE VKCQCLLFES  300
RGILCRHALS VLSFERVSQV SPRYILERWS KKSNHDEPLL EPRSKKFDIE LEELTAILHR  360
AYDNVMVEME LLKAKKNGTS SLSHKDANLK AVNELQSPPR IRTRGRPKNR LGSKLDKQIA  420
NAIKKKKMKG LNELNLFDAA SVVHSNSSQY QGHVMNYQFR SERFIFCPLA RDVKRCSPAY  480
TLIREITYPL KDETNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BP58N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444XYJ40.0A0A444XYJ4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-25far-red elongated hypocotyls 3