PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BYV33
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 725aa    MW: 79540.6 Da    PI: 8.0419
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BYV33genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.4e-24111212199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++ 
  Araip.BYV33 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RAENGD 204
                  89****************************986445444..8************************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Araip.BYV33 205 LCVGIRRA 212
                  9****997 PP
2Auxin_resp116.71.9e-38282365183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a++ a+++++FevvY+Prast+eF++k++ v++a+++++s GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Araip.BYV33 282 AITLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRIQWSTGMRFKMAFETEDSSRISWfMGTIASVQVVDPIRWPNSPWRLLQ 365
                  567899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-38103216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-30104217IPR015300DNA-binding pseudobarrel domain
CDDcd100172.82E-22110211No hitNo description
PfamPF023622.8E-22111212IPR003340B3 DNA binding domain
SMARTSM010192.4E-23111213IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169111213IPR003340B3 DNA binding domain
PfamPF065072.2E-33282365IPR010525Auxin response factor
PROSITE profilePS5174519.098613693IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MKEAEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQTNVDLGAP LRVPSFILCR  60
VAQVKFLADP ETDEVFTRMS LVPLRNSELD SDDGGVLDAN ALENSEKPAS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPRL DYSAEPPVQT VIAKDVHGEV WKFRHIYRGT PRRHLLTTGW  180
SSFVNQKKLV AGDSIVFLRA ENGDLCVGIR RAKRGTGGGS EAPSGWSSGN GSCGLGSYGA  240
FSAFLREETK LLRNGCGNSS PGGGGSGLNG KAKVSPESVR EAITLAASNQ PFEVVYYPRA  300
STPEFCIKAS AVRAAMRIQW STGMRFKMAF ETEDSSRISW FMGTIASVQV VDPIRWPNSP  360
WRLLQVTWDE PDLLHNVKRV SPWLVELVSS MPAINLSPFS PPRKKLRFPQ HPDFPLDVQF  420
PIPSFSGNPL GPHSSPLCCP SDNAPAGIQG ARHAQIGISL SDLYLNNKLQ LGVIPAANVQ  480
RLDLHSGFPS GGNFTGHDKS KESLSCLLTM GNSHNKSLEK SDNVKRHQFL LFGQPILTEQ  540
QISRRPSSSG GDDDVLPQNG TKKTSIDENE NKDKDKEKWF FNDSQSPLSQ QFSPGKSKSS  600
CSTELSWQIG LDTGHCKVFM ESEDVGRTLD LSRLSSYDEL YRRLSNMFGI ERSELLSHVL  660
YRDATGAVKQ TGEEPFSDFM KTAKRLTILT DPSNKDARRA WITGTRNGEH GLDASNKTGP  720
LSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-82838651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BYV33
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169705.10.0auxin response factor 18
RefseqXP_016169706.10.0auxin response factor 18
RefseqXP_025671379.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A444Y7V20.0A0A444Y7V2_ARAHY; Auxin response factor
STRINGGLYMA12G29720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]