PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.C1R8D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 687aa    MW: 76197 Da    PI: 6.8447
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.C1R8DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.4e-23137239199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd++++g +++pkk+a e+        +k++  ++l+ +d++g  W++++i+r++++r +lt+GW+ F ++++L +gD+++F   + +++e
  Araip.C1R8D 137 FSKILTSSDSGAHGGFSIPKKHAYECfpplvdmTLKPPA-QELVARDLHGYDWRFRHIFRGQPRRNLLTSGWSTFLNSKKLAAGDTCIFF--RGENGE 231
                  889*****************************8555554.59************************************************..449999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++v+r+
  Araip.C1R8D 232 LRIGVRRA 239
                  *****996 PP
2Auxin_resp83.54.7e-28266347183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t+s+F+v+++Pr+ + eF+v++++++k+++++++ GmR+++ ++ e+ +++r++Gtv++++d+d +rWp+S+WrsLk
  Araip.C1R8D 266 ASHAVATGSMFTVYHYPRTNPFEFIVPLQRYMKSTQMSYATGMRVQLLLDVEE-PRKRYAGTVISIEDFDGIRWPGSEWRSLK 347
                  789************************************************98.66778**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.11E-35125266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-32130247IPR015300DNA-binding pseudobarrel domain
CDDcd100176.09E-19136238No hitNo description
PfamPF023627.4E-21137239IPR003340B3 DNA binding domain
PROSITE profilePS5086312.844137240IPR003340B3 DNA binding domain
SMARTSM010193.1E-20137240IPR003340B3 DNA binding domain
PfamPF065072.7E-26266347IPR010525Auxin response factor
PfamPF023096.3E-8585673IPR033389AUX/IAA domain
PROSITE profilePS5174518.161588670IPR000270PB1 domain
SuperFamilySSF542772.26E-7590664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDADGVTASS SPNAADEGVN NYKKDGDELY ERVWRACAGE CVYIPRAGDK VLYFPQGYLE  60
QVASFTQHQQ DGHVDIPVHN QPSKILCRVV SVQLKTEAST DEVFAQVTLL PESKQDELSS  120
KDTDTAQIPS RSSVYSFSKI LTSSDSGAHG GFSIPKKHAY ECFPPLVDMT LKPPAQELVA  180
RDLHGYDWRF RHIFRGQPRR NLLTSGWSTF LNSKKLAAGD TCIFFRGENG ELRIGVRRAM  240
KRQNIASPSA SLISAQSMQL GILTSASHAV ATGSMFTVYH YPRTNPFEFI VPLQRYMKST  300
QMSYATGMRV QLLLDVEEPR KRYAGTVISI EDFDGIRWPG SEWRSLKVQW DATPHADMHP  360
ERVCPWWIEA LDCAKQKHIP ILPAPKKARP NNLPLPESSG FVKDEIIRYS AKPAAQRLER  420
DLQGQDYNDV ASPQAVLKQP SSKVICNSNL GIENQLLIPI QDPVHQCTGS SMSFPHEDLS  480
TSSSNAYCPG SESQGWPSSE SKDENDVPFG PHSSCTTYKL FGIYLTDCQS ELPSPQFSAY  540
SKIPSTISIP PMSHSSIYAT IQAAKQCGNI QGVSSEKRCK KCRSDNSRSC TKVLKQGTAL  600
GRAIDLTRFA GYDELISELD WMFDFGGGLI NGSSGWHVTC IDEDGDIMLL GDFPWQDFRS  660
MVQKMIIRPK DAINNPSPSS SAYPASI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1182737617360Auxin response factor 1
4ldw_A1e-1182737617360Auxin response factor 1
4ldw_B1e-1182737617360Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.C1R8D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016206017.10.0auxin response factor 4-like
RefseqXP_025660701.10.0auxin response factor 4
TrEMBLA0A444YIA20.0A0A444YIA2_ARAHY; Auxin response factor
STRINGGLYMA19G39340.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-142auxin response factor 11