PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.C2P28
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 140aa    MW: 16178.9 Da    PI: 10.5414
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.C2P28genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.51.2e-191197190
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                 +fY++YAk+vGF ++++ +++  + +  +++  +C++egkr+ + +     ++t++ t+ +C a++ ++++k+g w ++k+ l+H+H++ 
  Araip.C2P28 11 QFYQNYAKRVGFVTKIRFTRRVGKGKVPKNQMITCNREGKRKFKVSP---IEKTNPRTNYKCPARISIRLNKEGLWIISKVCLDHSHPCD 97
                 6*********************9999999999**********98877...999**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.9E-171197IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MCFGTIDDAN QFYQNYAKRV GFVTKIRFTR RVGKGKVPKN QMITCNREGK RKFKVSPIEK  60
TNPRTNYKCP ARISIRLNKE GLWIISKVCL DHSHPCDPEM AKLLTRNREM SMHMCRVIER  120
NDEAGVRPSK TYQVLVGEAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.C2P28
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962352.11e-93protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444X0951e-101A0A444X095_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-13FAR1 family protein