PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.C3CAW

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 211aa MW: 24416.4 Da PI: 5.1583

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.C3CAW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63	8.4e-20	24	109	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++Y ++vGF+ r+++skk+ ++ +++ +vC++egk+e++ ++ +r+t ++ tgCka++ + + g w v ++leH H+l+ Araip.C3CAW 24 EFYDTYPRRVGFDWRNRNSKKN-ADKVVYHVMLVCNREGKAESKVDE---TRKTYPKGPTGCKARMIASSDVGGSWIVRVVKLEHCHDLN 109 6**************99998.8889***********99877...999********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-17	24	109	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MESETGDDVP IVGMEFESLD AIIEFYDTYP RRVGFDWRNR NSKKNADKVV YHVMLVCNRE 60 GKAESKVDET RKTYPKGPTG CKARMIASSD VGGSWIVRVV KLEHCHDLNC TNSSILRRNK 120 EFEDNWTGFV NAYCLEDNEW LQGMWNDYRY WVLVYLKGDF WAGISSTQRN ESVHFLFDKY 180 LNSQTTLAEA TKDFNSLNKV VPCCSNSEIE V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.C3CAW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016199513.1	1e-65	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025652176.1	1e-65	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444XS74	1e-89	A0A444XS74_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1-related sequence 5