PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.C42RV

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 200aa MW: 23363.6 Da PI: 8.1411

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.C42RV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.4	1.6e-15	67	151	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY++YAk + Fs+r++ ++++ +ei+++ +Cs+e k +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H++ Araip.C42RV 67 KFYRNYAKAASFSTRVRCTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPC 151 6*************998776..8889*******99998776...8999**********998879************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-12	67	152	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVLEVYYI RHDWFLTRCI VQPLSVVDDE LVPKVGMTFT 60 TLEDAGKFYR NYAKAASFST RVRCTNRKGN EIKNQLITCS REEKWKSKIS PTEKTNPTAG 120 LNCPARIYIH TLKDVGAWII SKVVLDHSHP CYPSKAEMLK QHRKLSMSIR RTIENNEEAD 180 RHIWVPIYLD HHFWARMRST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.C42RV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997362.1	1e-105	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444X817	1e-129	A0A444X817_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	8e-10	FAR1-related sequence 4