PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.C4BGM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 517aa    MW: 58934.7 Da    PI: 9.2543
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.C4BGMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.14.5e-1659145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w + k++l+H+H+++p
  Araip.C4BGM  59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTVGLNCPARIYIHTLKdVGAWIILKVVLDHSHPCCP 145
                  6***************998776..8889***********99998776...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1359145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186322358IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4324355IPR007527Zinc finger, SWIM-type
SMARTSM005750.0021333360IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDHSTSNCQL NPGEVDYEFE SNEVPEVYYI RHDWPLSVVD DELVPKVGMT FTTLEDAGKF  60
YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREEKWKSK ISPTEKTNPT VGLNCPARIY  120
IHTLKDVGAW IILKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE AGIRPSKTYQ  180
SFVAAAGGHH RHIWVPIYLD HHFWAGMRST QRSESMHSFF NKYITRNSSL IQFVKQYDNC  240
LGSREQAERE SNAVDFHTVI PCATKSSIEA QFQDAYTHAK FREVQAQFRG KANCITRLTN  300
SALGYSVYEV GEQVSSSIFN KFVVTYDSVA AEVKCQCLLF ESRGILCRHA LSVLSFEQSK  360
KVKRRHTHIK SSHDQPLIEP RSKRFDQLVF RSQNICEFAS ESDELTAILH RAYDNVMPEM  420
ESLKAKRKGT SSLSHEDANL ESVNELQSPP RIRTRGRPKN RLGSKLEKQI ANATKKKKTK  480
VLSEINLFDA ASAVHSNSSQ YQGHVMNYQF RVPAVGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.C4BGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444X8170.0A0A444X817_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-25FAR1 family protein