PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.C4R5H

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 177aa MW: 20050.1 Da PI: 9.4863

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.C4R5H	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.9	1.9e-09	25	103	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY+ Y k +GFs++++++++ g +k+++ s + + + +t+++ +C a++ v+ +k g+w ++k++l+H+H+++p Araip.C4R5H 25 KFYKYYFKLAGFSTKIRNTTRD---GDKIKNQLIKS----------NISPTLKTNPSAGLNCPARIYVHIMKdVGVWTISKVVLNHSHPCCP 103 6*************987776...54555555422..........12234567999**********999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-7	25	103	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
TSCVVDERFV PKVGIIFETL EEAAKFYKYY FKLAGFSTKI RNTTRDGDKI KNQLIKSNIS 60 PTLKTNPSAG LNCPARIYVH IMKDVGVWTI SKVVLNHSHP CCPDQAEMLK QHRELSIVFG 120 SPHLMGSFIT RSSSLRQFVK QYDNCLSSRE QAKRQFDATD FHTVIPCATK SAIEAQF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.C4R5H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016172294.1	1e-70	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444WXS8	2e-89	A0A444WXS8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-09	FAR1 family protein