PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.C571L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 242aa    MW: 27454.8 Da    PI: 6.6823
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.C571LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.3e-152158138
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                 kr+e + +r+vtfskR+ g++ K  ELS+LC+ae a+i
  Araip.C571L 21 KRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALI 58
                 7899********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.0491358IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-121381IPR002100Transcription factor, MADS-box
CDDcd001201.09E-181458No hitNo description
SuperFamilySSF554552.09E-151461IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-101535IPR002100Transcription factor, MADS-box
PfamPF003191.8E-132258IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-103550IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MASSHAIIPD KATRKRKIEI KRVEQSNKRH VTFSKRKLGL FNKVTELSIL CQAETALIKK  60
QEEKVEALRA QYESLEESLK EEKKRLEEAE NARKNMNNNG GCLGFSSQWW ENPIDDMDLE  120
ELVKFKESLE QLKVNLFATA EKKIMFQELM PSPPLASSSS IMPPMQTRVP NFYSNLNNNG  180
GFNANNVGFN AVHHPQQQAH WDYWTNNGIA SSNNQNSLGS CDFGNNTIIA AANDVESSKE  240
YE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.C571L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025635268.11e-138agamous-like MADS-box protein AGL23
TrEMBLA0A445EHB61e-142A0A445EHB6_ARAHY; Uncharacterized protein
STRINGGLYMA07G05031.17e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-11AGAMOUS-like 15