PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.C9ZKH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 64aa    MW: 7631.87 Da    PI: 11.6817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.C9ZKHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-072146630
                 HHHHHHHHHHHHHHHHHHHCTSCC.C CS
          HLH  6 nerErrRRdriNsafeeLrellPk.a 30
                 +++Er RR ri +++ +L+el+P+ +
  Araip.C9ZKH 21 SIAERVRRTRISDRIRKLQELVPNmD 46
                 689********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.3241564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-81851IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-72050IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-52146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MKDSVPWKVR AKRGCATHPR SIAERVRRTR ISDRIRKLQE LVPNMDKELS EQQQRCNCVV  60
QRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.C9ZKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193264.22e-34transcription factor bHLH81
RefseqXP_025643122.12e-34transcription factor bHLH81-like isoform X1
SwissprotQ9M0R01e-25BH081_ARATH; Transcription factor bHLH81
TrEMBLA0A445E1L54e-32A0A445E1L5_ARAHY; Uncharacterized protein
STRINGGLYMA08G26110.11e-25(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.11e-17bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]