PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.CAS5B

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 296aa MW: 32878.8 Da PI: 6.9226

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.CAS5B	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.9	1.1e-05	16	42	1	27
CHHHHHHHHHHHHHHHHHHHHHHHCTS CS HLH 1 rrrahnerErrRRdriNsafeeLrell 27 r++ + rE+ RRdr+N+ f+ L l Araip.CAS5B 16 RKVQKADREKLRRDRLNDHFHDLANTL 42 5677889****************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
EKGQAEPPQD PAVAARKVQK ADREKLRRDR LNDHFHDLAN TLGLSLSLSL LHDYNHFACI 60 IHSHNCCDWD IYFAPLIMLK TEHKALSDES RELMQEKNEL REEKASLKSD IENLNSQYQQ 120 RARMMFPWTA MDHSVVMAPP PYSYPVPIPI PPAPVPIHPT LQPFPYFGNQ NPPHIPTPCS 180 TYVPFSAPIN AALDLPSAQY ASASHVPTQK DCRSKSPPHR RITDSESHDV ATELELKMPG 240 SSSTQEESSS GGTKKVKHSG RKDRVVAEGS ASSRYSTSHG LQDSSNSVGD IPKADS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.CAS5B

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016199031.1	1e-163	transcription factor bHLH121, partial
TrEMBL	A0A444WUL7	1e-160	A0A444WUL7_ARAHY; Uncharacterized protein
STRING	XP_004498238.1	1e-104	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-46	bHLH family protein