PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CD6XJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 219aa    MW: 24129.3 Da    PI: 10.5967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CD6XJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
      Araip.CD6XJ  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55
                     79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.774161IPR017930Myb domain
SuperFamilySSF466894.49E-15266IPR009057Homeodomain-like
SMARTSM007174.1E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-12556IPR009057Homeodomain-like
PfamPF002491.9E-7555IPR001005SANT/Myb domain
CDDcd116602.41E-18657No hitNo description
SMARTSM005262.0E-12125190IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.489127196IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.36E-13130188IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.8E-15131188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.8E-11133188IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLPIPK IDCNHMAIST VVQRDEVADY KPLAISGGAS QSANSKEHIS  120
SSNMRFDSGR LDTLILESII KLKEPKGSDR AAIAAYIEDQ YSCPPNLRKL LSAKLKHMVA  180
SGKLMKVTSL LVHVVARCIQ LGIGTKVAKK QHPCLCRPL
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CD6XJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684773e-73EF468477.1 Medicago truncatula MYB transcription factor MYB25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201621.11e-136telomere repeat-binding factor 2 isoform X1
RefseqXP_016201622.11e-136telomere repeat-binding factor 2 isoform X1
RefseqXP_025652272.11e-136telomere repeat-binding factor 2 isoform X1
RefseqXP_025652273.11e-136telomere repeat-binding factor 2 isoform X1
RefseqXP_025652274.11e-136telomere repeat-binding factor 2 isoform X1
RefseqXP_025698549.11e-136telomere repeat-binding factor 2 isoform X1
RefseqXP_025698550.11e-136telomere repeat-binding factor 2 isoform X1
SwissprotQ8VWK46e-62TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A444ZAM71e-135A0A444ZAM7_ARAHY; Uncharacterized protein
STRINGXP_007156706.11e-101(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-64telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]