PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CM3S8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 523aa    MW: 59947.6 Da    PI: 8.8984
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CM3S8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.88.4e-1961147191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w+++k++l+H+H+++p
  Araip.CM3S8  61 KFYRNYAKAAGFSTRVQSTNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWMISKVVLDHSHPCCP 147
                  6****************98887..7779*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1661147IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.421310346IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-4312343IPR007527Zinc finger, SWIM-type
SMARTSM005750.0051321348IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDDSSSDCQL NQGEVDYEFE LTKFLRRSGV DQSFSWPLSV VDDQFVPKVG MTFTTLEDAG  60
KFYRNYAKAA GFSTRVQSTN RKENEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR  120
IYIHTLKDVG AWMISKVVLD HSHPCCPSKA EVFKQYRELS LSIRRTIENN EEADLYEDRH  180
IWVPIYLDHH FWAGMRSTQS SKSMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD  240
AADFHTVIPC PTKSSIEAQF QDVYTHQKFR EVQAQFRGKA NCITKLTNSA LGYSVYEVGE  300
QVYSSIFNKF VVTYDSVAAE VKCQCSLFES RGILCRHALS VLSFEQASQV SPRYILERWS  360
KKVKRRHTHI KSSHDEPLME PRSKRFDQLV FRSQNIYEFA SESEELTAIL HRAYDNVMAE  420
IESLKAKRNG TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLDKQ IVNATKKKKT  480
KVLSEINLFD AASVMHSNSS QYQGHVMNYQ FRVPAAGDNS FAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CM3S8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.26e-33far-red elongated hypocotyls 3