PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CS3IA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 268aa    MW: 30720.2 Da    PI: 6.304
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CS3IAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-123577246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
      Araip.CS3IA 35 GEFSEEEDRIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 77
                     78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.101128IPR017877Myb-like domain
SuperFamilySSF466891.25E-211583IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-111540IPR009057Homeodomain-like
PROSITE profilePS5129421.9162983IPR017930Myb domain
SMARTSM007171.7E-113381IPR001005SANT/Myb domain
PfamPF002493.9E-113577IPR001005SANT/Myb domain
CDDcd001672.21E-83679No hitNo description
Gene3DG3DSA:1.10.10.603.8E-194180IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALVAIGLLF LKKLRCGKSC RLRWLNYLRP NIKHGEFSEE EDRIICSLYV NIGSRWSIIA  60
AQLPGRTDND IKNYWNTKLK KKLISGFLPN SSSIHQRKHH QQQQPPFPSS SMYMDQYYGS  120
YVTGLVDPIS LPSTEYYANT TTTTSVPFYQ HQVDSIVSPS SMQQNYHMFG SEGSCSSSDN  180
GSSIKQEEIG YHHQGSYNNI IAFDDFNNNN KFLVMPSSFN DNNNNSIVNY DGGENITEYD  240
LEEIKQLISV SSSVDEIKEE KQPIYYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-20138338108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CS3IA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187492.10.0transcription factor RAX2
RefseqXP_025641703.10.0transcription factor RAX2
TrEMBLA0A445AA600.0A0A445AA60_ARAHY; Uncharacterized protein
STRINGGLYMA12G08480.13e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-43myb domain protein 36