PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CUC52
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 215aa    MW: 24854.1 Da    PI: 6.3419
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CUC52genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.81e-19122213191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fY+ ++k  GF +rk    k  ++g+ ++r+f C+k   re+++ +  ++ +++++etrt+C+akl + +++  ++w+v k+ leHnH+l p
  Araip.CUC52 122 EFYRVFGKFHGFGIRKGDCGKD-DDGRLIRRRFFCNKARLREHKHYNrVDRWQEHKPETRTNCDAKLSIYLDSnISVWRVRKVILEHNHDLKP 213
                  6*****************9998.8899****************99994556677899***************989***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-17122213IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
SNSEFTQIPL PSIATTFLQL PSINQRLPSL AAHVTVEHVA YLARSPLQSL AFAHLAVTHL  60
YGCILYMEAL SIDCTTDVNN EFEWSSEDEI DDVEGLEYED ILGLTAGDIM RMVFCSDDGA  120
YEFYRVFGKF HGFGIRKGDC GKDDDGRLIR RRFFCNKARL REHKHYNRVD RWQEHKPETR  180
TNCDAKLSIY LDSNISVWRV RKVILEHNHD LKPTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CUC52
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020967160.11e-108protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_029151821.11e-108protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15343210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-07FAR1-related sequence 10