PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CX2J8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 290aa    MW: 33777.2 Da    PI: 5.8349
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CX2J8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.9e-17178266188
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                  f+ v+  s+ +  +++ +p +fa+e+++  e++    l+  +gr+W+v ++ + ++g+    y l+kGW +F + n+L+ +D++vF+l+++  
  Araip.CX2J8 178 FEVVMPDSYINGGRCMAVPSNFAREYMK--EGG--YLLRVADGRTWKVMYKTWSGDGMackkYKLQKGWAKFSQGNKLEKNDVCVFELVNNnC 266
                  5566666666777889**********84..466..6666777********998888888999*************************997733 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-1210108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.85214109IPR003340B3 DNA binding domain
CDDcd100172.37E-814107No hitNo description
Gene3DG3DSA:2.40.330.106.2E-1114108IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.01615109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-19172283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-19173266IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-18176283No hitNo description
SMARTSM010196.0E-6178270IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041178280IPR003340B3 DNA binding domain
PfamPF023621.0E-15178266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAIHQQHEPT SVVSFFKIIC RWHILDEKIK LPMEFTNKCG LKLPNPVILK VVDGNQKKVH  60
WTKINGSIWF IGKEWKEFLE NYSVSHGHLL LFKYCLVTSY FGVQIFDSTT LEINYPYHEL  120
NYDDYEDYYD EDDDDDDEDV DDVVKLQYDQ YQLKDKSESI ADAIRSDRLE RKDSNPSFEV  180
VMPDSYINGG RCMAVPSNFA REYMKEGGYL LRVADGRTWK VMYKTWSGDG MACKKYKLQK  240
GWAKFSQGNK LEKNDVCVFE LVNNNCNGSS STIIPTFNVL IHRNHIGSSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CX2J8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200763.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_025654740.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A444Z4V10.0A0A444Z4V1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1909224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-14B3 family protein