PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CZ9NC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 320aa    MW: 35402.4 Da    PI: 7.8812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CZ9NCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13124168347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
      Araip.CZ9NC 124 PWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 168
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.764117173IPR017930Myb domain
SuperFamilySSF466891.79E-17119173IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-18120171IPR006447Myb domain, plants
SMARTSM007172.2E-10121171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-11121167IPR009057Homeodomain-like
PfamPF002492.2E-11124168IPR001005SANT/Myb domain
CDDcd001672.96E-9124169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTT SPMMMMMRGG TNNNNNNNSF VGLRLFGVQL DISSSSCCVA  60
MKKSFSMDSL PSSSSTTTTT TSSFSSSRLP IDDNITLNNN NSSAFGYLSD GLIVPPQDRK  120
KGVPWTEEEH RTFLVGLEKL GKGDWRGISR NYVTTRTPTQ VASHAQKYFL RLATINKKKR  180
RSSLFDLVGI GNNNTKTEFH DDVGGISNCK SGDSSVIVCN ESKLEEVVEN NDIDHATLSL  240
LGRLTPFHQE IKSDNDLKVN TINNDNYNHN HQPFWPHHHH QQHMNSSSTV PDLELTLAAP  300
EDQNKSTSPS SFFFGPISVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CZ9NC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086720.0KF208672.1 Arachis hypogaea putative MYB-related protein 18 (MYB18) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200943.10.0myb-like protein I
RefseqXP_025656218.10.0myb-like protein I
TrEMBLA0A445D3T20.0A0A445D3T2_ARAHY; Uncharacterized protein
STRINGXP_004513098.18e-97(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-57MYB_related family protein