PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D1GPC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 503aa    MW: 57201 Da    PI: 9.1702
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D1GPCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.41e-1761147191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.D1GPC  61 KFYRNYAKVAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TKKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 147
                  6***************998776..8889*************998877...999***************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1561147IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDHSTSDCQL NTGEVDYDFE SNEVPEPVYL QFMALKPLSV VDDELVPKVA MTFTTLEDAG  60
KFYRNYAKVA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTKKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAGMRSTQR  180
SESMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC ATKSSIEAQF  240
QDAYTHAKFR EVQAQFRGKA NCITRLMNSA LGYSVYEVGE QVFSSIFNKF VVTYDSVAAE  300
VKFQCLLFES RGILCRHALS VLSFEQVSQV SPIYILERWS KKVKRRHTHI KSSHDEPLME  360
PRSKRFDQLV FRSQNICEFA SESEELTVIL HRAYDNVMVE MESLKAKRKG TSSLSHEDAN  420
LESVNELQSP PRIRTRGRPK NRLGSKLDKQ IANATKKKKT KVLSEINLFD AASVVHSNSS  480
QYQGHVMNYQ FRVPAAGDNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D1GPC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-27far-red elongated hypocotyls 3