PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D20NA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 244aa    MW: 25511.3 Da    PI: 4.7038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D20NAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-06124145223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +Cp+C+k+Fs++     H+r+H
  Araip.D20NA 124 TCPICSKTFSSWKGAFGHMRKH 145
                  6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEKNHSTSAS TTSLPSLSLS TPVTEPPSSP LVDQPNLSGE EEKLNILKTP EKILTDLTTN  60
NDANGGSALP PSSPPPSPPQ MMVSGAIATA VGGGAVVLGG NNIIGPIKRR KASEIMDPPS  120
GTPTCPICSK TFSSWKGAFG HMRKHPDRQY RGFFKPPTFA PSSSKAATNA SGNRHEAAGE  180
EGSSAASGEV GEGGASPAVR NLLFDLNHPV EGVKDEEEGK IILGFDLNEP AVEEEEEEKE  240
DKPF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D20NA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016199014.11e-176uncharacterized protein LOC107639974
TrEMBLA0A444WUV31e-127A0A444WUV3_ARAHY; Uncharacterized protein
STRINGXP_007157993.12e-30(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.11e-15C2H2 family protein