PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D25HB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 390aa    MW: 44043.4 Da    PI: 6.7179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D25HBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.7e-51111341128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhP+deelv++yL kk ++++  l   + +vd++k+ePwd+p+++  + kewyf+++rd+kyatg r+nrat+sgyWkatgkd+++l+ kg+
  Araip.D25HB  11 LPPGFRFHPKDEELVCDYLMKKFTHNESLL---MIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILR-KGS 104
                  79**********************999544...789************7777799**************************************9.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  lvg++ktLvfy+grapkg+kt+Wvmhe+r+
  Araip.D25HB 105 LVGMRKTLVFYQGRAPKGRKTEWVMHEFRI 134
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-602158IPR003441NAC domain
PROSITE profilePS5100555.94811157IPR003441NAC domain
PfamPF023651.3E-2612134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSNISLVEAR LPPGFRFHPK DEELVCDYLM KKFTHNESLL MIDVDLNKCE PWDIPETACV  60
GGKEWYFYTQ RDRKYATGLR TNRATASGYW KATGKDRPIL RKGSLVGMRK TLVFYQGRAP  120
KGRKTEWVMH EFRIEPPLPP PNTSSKEDWV LCRVFYKNRE VGGKPNSMGS CYDDTGSSSL  180
PALMDSFISF DQQQQPQTHL HADEYEQVPC FSIFSHTQTS PIFNHIMEPK LFPTNNNNNN  240
ATLYGGGGTT TTSNLGSCLD PFSCDRKEDW VLCRVFYKNR EVGGKPNSMG SCYDDTGSSS  300
LPALMDSFIS FDQQQQPQTH LHADEYEQVP CFSIFSHTQT SPIFNHIMEP KLFPTNNNNN  360
NATLYGGGGT TTTSNLGSCL DPFSCDRKAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-49615812166NO APICAL MERISTEM PROTEIN
1ut4_B5e-49615812166NO APICAL MERISTEM PROTEIN
1ut7_A5e-49615812166NO APICAL MERISTEM PROTEIN
1ut7_B5e-49615812166NO APICAL MERISTEM PROTEIN
3swm_A6e-49615815169NAC domain-containing protein 19
3swm_B6e-49615815169NAC domain-containing protein 19
3swm_C6e-49615815169NAC domain-containing protein 19
3swm_D6e-49615815169NAC domain-containing protein 19
3swp_A6e-49615815169NAC domain-containing protein 19
3swp_B6e-49615815169NAC domain-containing protein 19
3swp_C6e-49615815169NAC domain-containing protein 19
3swp_D6e-49615815169NAC domain-containing protein 19
4dul_A5e-49615812166NAC domain-containing protein 19
4dul_B5e-49615812166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D25HB
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171234.10.0NAC domain-containing protein 21/22
RefseqXP_025672523.10.0NAC domain-containing protein 21/22
SwissprotQ84TE61e-110NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A444Y2A10.0A0A444Y2A1_ARAHY; Uncharacterized protein
STRINGXP_007149262.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-110NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]