PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D3S94
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 411aa    MW: 46558.2 Da    PI: 7.0309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D3S94genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12233278454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Araip.D3S94 233 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 278
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-412153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.71229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-17229295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.55E-14232283No hitNo description
PfamPF000105.4E-10233278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-17233295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-15235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLQQNLQFLL QSQPSWWVYA IFWSTTKDDN GNLYLAWGEG HFQGNTTKHT KTQQQHNQND  60
AEWFYVMSLT RTFPIANSSS SSLPGKAFAL GSVLWLNSKE ELQFYNCERA KEAHAHGIET  120
LICIPTSNGV VEMGSYNTIP QNWNLINHVK SVFEDSMVNN NNNNNNHCSN SRKQADVTVP  180
FNKESKDSYA ESEHSDSDCP FLKTENTENK NKLEAPKSKR GRKPVLNRET PVNHVEAERQ  240
RREKLNHRFY ALRAVVPNVS RMDKASLLSD AVAYINELKA KIKDLESEKD NYQRKKKVKL  300
ESGDTMDNQS TVTNSSTVVD QEKCSNGVVA EVDVKIIGDD AMVRVQSENV NHPGARLMGA  360
LRDMEFQVHH ASMTCVNELM LQDVVGKVPS GILRSEEGIR SAILMRLDHI N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-28226307183Transcription factor MYC2
5gnj_B2e-28226307183Transcription factor MYC2
5gnj_E2e-28226307183Transcription factor MYC2
5gnj_F2e-28226307183Transcription factor MYC2
5gnj_G2e-28226307183Transcription factor MYC2
5gnj_I2e-28226307183Transcription factor MYC2
5gnj_M2e-28226307183Transcription factor MYC2
5gnj_N2e-28226307183Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D3S94
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0992791e-95DQ099279.1 Arachis hypogaea clone Ah-331 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181996.10.0transcription factor MYC2
TrEMBLA0A445ACX00.0A0A445ACX0_ARAHY; Uncharacterized protein
STRINGGLYMA16G02320.21e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-77bHLH family protein