PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.D3STF

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 354aa MW: 40161.5 Da PI: 9.8399

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.D3STF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.9	3.7e-14	85	174	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY +YAk+vGF +++++++ k+++ +++ + ++eg+re++ ++ + r + t + C+ ++ v ++k ++ w+v++lel H+H + Araip.D3STF 85 KFYANYAKKVGFVTKIRNTNFDktrKKSKIPVNQSIYSTREGYRESRVNA---ATRANRITAMRCRERMYVMLDKeKESWVVSRLELRHSHRC 174 6*********9999887765444666667899999*****9988...889999**********9999************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-11	85	174	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MAFSTPEGGS ISTLINPTQG DERFSVGEVV IQEQEGSKVD EITDVVVTRK DELDYGHELS 60 NHSGVGEDKI PVIGMSFGSL PLAQKFYANY AKKVGFVTKI RNTNFDKTRK KSKIPVNQSI 120 YSTREGYRES RVNAATRANR ITAMRCRERM YVMLDKEKES WVVSRLELRH SHRCSAKKAV 180 HYHEYRELTM HVKCVITDNY EAGIRPNKTF LALANEVVRR WSTNVIRKHT YIKSSHDVAQ 240 SDESNNLFRH LCSEFYNVAQ EFVACEEEAT ILRAAFWDAK AKLTDYRASM HSTTIAATQN 300 TMPTQSTGGA IVHDIRGPSR VKTKGRPKSK RLGVELDKSI KKSMQKKEEE ITSG

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MAFSTPEGGS ISTLINPTQG DERFSVGEVV IQEQEGSKVD EITDVVVTRK DELDYGHELS  60
NHSGVGEDKI PVIGMSFGSL PLAQKFYANY AKKVGFVTKI RNTNFDKTRK KSKIPVNQSI  120
YSTREGYRES RVNAATRANR ITAMRCRERM YVMLDKEKES WVVSRLELRH SHRCSAKKAV  180
HYHEYRELTM HVKCVITDNY EAGIRPNKTF LALANEVVRR WSTNVIRKHT YIKSSHDVAQ  240
SDESNNLFRH LCSEFYNVAQ EFVACEEEAT ILRAAFWDAK AKLTDYRASM HSTTIAATQN  300
TMPTQSTGGA IVHDIRGPSR VKTKGRPKSK RLGVELDKSI KKSMQKKEEE ITSG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.D3STF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025670217.1	1e-158	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445ELA1	1e-173	A0A445ELA1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23567	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-08	FAR1 family protein