PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.D4AUE

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 271aa MW: 31576.8 Da PI: 8.6734

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.D4AUE	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9.3e-20	64	152	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y+eY++ F r++k+ ++ ++ge+++ t+ C++eg+r+++ + ++ +r+++++ r+ C a++++k ++ +gkw+v++++ +HnH+l Araip.D4AUE 64 LYEEYSRVRSFGSRQEKKIRN-KKGEFVRFTYLCNREGFRDKKWLQmHHLKREHKVVIRCRCPAEMRIKPRDnTGKWYVSRFVDNHNHDL 152 7*************99998.6777************988756778889999*********999*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-17	64	153	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
SQTVDIGGNS EDVTLDMGME DVETTGVALK QMRENGNTSV EGISLTVDDI LQMEFNDPKQ 60 VARLYEEYSR VRSFGSRQEK KIRNKKGEFV RFTYLCNREG FRDKKWLQMH HLKREHKVVI 120 RCRCPAEMRI KPRDNTGKWY VSRFVDNHNH DLPPAKFVEY LPSHRKISDV DIAHMDSMRQ 180 VGISVPKIYE SIAAQAGGFN QVSFTKRDMY NELGRFVKKR YGVLEFVTNF QRCVDFLRDN 240 KDELEFRSSY GTVIQTQFPE LEKSGALCYT T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.D4AUE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015945326.1	1e-127	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444XQX7	1e-145	A0A444XQX7_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9185	2	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-17	FAR1-related sequence 5