PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.D6G4F

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HD-ZIP

Protein Properties

Length: 258aa MW: 29130.2 Da PI: 6.6369

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.D6G4F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	38	91	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA++lgL+ rq+ +WFqNrRa++k Araip.D6G4F 38 KKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWK 91 456899***********************************************9 PP
2	HD-ZIP_I/II	131.1	4.2e-42	37	127	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lkr+++a+k++n++L++++++L++++ Araip.D6G4F 37 EKKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKTKQLERDYDQLKRQFEAVKSDNDALHAQNQKLQAQI 127 69**************************************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-19	18	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.34E-19	31	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.184	33	93	IPR001356	Homeobox domain
SMART	SM00389	1.8E-18	36	97	IPR001356	Homeobox domain
Pfam	PF00046	7.8E-16	38	91	IPR001356	Homeobox domain
CDD	cd00086	4.72E-15	38	94	No hit	No description
PRINTS	PR00031	5.5E-6	64	73	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	68	91	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.5E-6	73	89	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.1E-15	93	133	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSFSGIDLGG GGGGGGVEEG NNNGEEELSD DGSQIGEKKR RLNMEQVKAL EKSFELGNKL 60 EPERKMQLAR SLGLQPRQIA IWFQNRRARW KTKQLERDYD QLKRQFEAVK SDNDALHAQN 120 QKLQAQILAL KNREATTESI NLNKDTEGSC SNRSENSSEI KFDISTRTPT PTTTTTTTTI 180 VDSPLSSKPF FPSSSSSTRP PHQLFQISRP EIHLHQCHQQ NNNNNNHVVA KEESLSSMFV 240 AMDDQSGFWP WLEQQHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	93	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.D6G4F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016202718.1	0.0	homeobox-leucine zipper protein ATHB-13 isoform X2
Swissprot	Q8LC03	8e-96	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A444Z5I1	0.0	A0A444Z5I1_ARAHY; Uncharacterized protein
STRING	evm.model.supercontig_183.29	1e-111	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1271	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	6e-85	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]