PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D6Q60
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 185aa    MW: 20872.9 Da    PI: 6.305
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D6Q60genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-082366344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT e d+ + +a    + +   +W++Ia+ ++ g+++ ++++r+
      Araip.D6Q60 23 HWTREQDKVFERALLFVPEDlpdRWDKIAEQVP-GKSAVEVRDRY 66
                     6*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.6081670IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-61871IPR009057Homeodomain-like
SMARTSM007173.0E-72072IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-122278IPR009057Homeodomain-like
PfamPF002494.0E-72367IPR001005SANT/Myb domain
CDDcd001671.84E-72470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MFQETTAVAT RWGTEAVEVR MNHWTREQDK VFERALLFVP EDLPDRWDKI AEQVPGKSAV  60
EVRDRYEALV RDVYEIDSGR VEVPRYSDDS AGSGGGGGGL YRTPTQVASH AQKYFLCQNS  120
GKKERKRSSI HDITTVDSNS VPVPVDQNWV APPQQEMQQH QQHQHFNPHN HVGAGGFGYS  180
NYGGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D6Q60
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016173664.11e-110transcription factor DIVARICATA
TrEMBLA0A444XUT62e-99A0A444XUT6_ARAHY; Uncharacterized protein
STRINGAES843684e-66(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60683251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-37MYB family protein