PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.D8U59

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 258aa MW: 30178.7 Da PI: 10.1256

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.D8U59	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.7	2.5e-10	11	91	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +G ++ +i+++ vCs+ g+ +++ + + +t+++ ++C a++ ++ k g w ++k++l+H+H+++p Araip.D8U59 11 KFYKNYSKLAGNTTWDGD--------KIKNQLIVCSRDGRWKSKISP---TLKTNPSAGINCPARIYIHILKdAGLWTISKVVLNHSHPCCP 91 578888888886665554........4666889*****9998776...999************98879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-7	12	91	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MIFKTLEEAE KFYKNYSKLA GNTTWDGDKI KNQLIVCSRD GRWKSKISPT LKTNPSAGIN 60 CPARIYIHIL KDAGLWTISK VVLNHSHPCC PDRAEMLKQH RELSMFVRRT IETNKEAGIR 120 PSKTYQSFVA TTGNHRELKL YEDRHIWIPV YLDHHFWVRM TSTQRSKSMH AFFNKFITCN 180 ISLRKFVKQY DNCLASREQR EREFDASDFH TVIPCATKSA TEAQFQHVYT HEKFREAQAQ 240 FRGKVKCITR SMHSTLGL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.D8U59

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029151637.1	6e-89	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445B8J0	1e-146	A0A445B8J0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-15	FAR1 family protein