PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DB6DZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 701aa    MW: 76247.7 Da    PI: 6.4568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DB6DZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.8e-07277297526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd C +aHg
  Araip.DB6DZ 277 PCPEFRK-GSCSKGDFCEYAHG 297
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.8E-1630181IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.75E-1434159IPR020683Ankyrin repeat-containing domain
PfamPF127963.3E-770142IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.9975150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03475105IPR002110Ankyrin repeat
CDDcd002043.97E-1377155No hitNo description
PROSITE profilePS5008811.381110145IPR002110Ankyrin repeat
SMARTSM002480.048110142IPR002110Ankyrin repeat
SMARTSM003563.5E-4272298IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4277297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671277299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4305335IPR000571Zinc finger, CCCH-type
SMARTSM003562.4307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MCSGSKRKPT QTGLVMEDDY GREEGQHQKI SALLELAAAD DLIGFKDAVE KEGCDVDEAG  60
SWFGRRLGSK KVGYEERTPL MVAAMFGSLR VLAYILGTGC VDVNRASGSD GATAIHCAVA  120
GGSAASLEVV KLLLESLADV STVDSNGNRP CDLVVSGANS IPNSRKRVLQ AMLEGTVGTD  180
KTLEDVVGQI EEQQRENAVN MPRVLKDAAE RKDYPVDHSL PDIKNGIYGT DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCSKGD FCEYAHGIFE  300
CWLHPAQYRT RLCKDEGACT RRVCFFAHKP EELRPLYAST GSAMPSPRSY SSGSSLDMGP  360
VSPITLGSPS VMIPPASTPP LTPSGSSSPL SGSMWQTQSN IPTLQLPRSS RLKTALAASD  420
INSDTELLML MMDEMTGLSS PSGWRNSLTN NNPSYHYSLG DRAADLNRLS GVTPTNLDDT  480
FGSVDPSILS KFNGISFDAA GPQLHLPTGL QMRQNMNQQL RGYSSGLPSP KVIGSPKSRV  540
DPSGEPTSLA FNPRLAAFSQ RSQSFIERSM GNRHSEVPSL ATSVAAKPSL AYSHWGSHDG  600
KLDWPMQGEE LNKLRKSASF GFRSSSNIPS PRAATRMSAA KVDEPDVSWV SSLVKDAPAQ  660
PEPGQFSAED QQQLQCHLNN GTDVIPAWLE QMYIDQEQLV A
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DB6DZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166467.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_025664042.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A444YAV00.0A0A444YAV0_ARAHY; Uncharacterized protein
STRINGXP_007142205.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-172C3H family protein