PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.DCT9V

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 481aa MW: 54807 Da PI: 8.8684

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.DCT9V	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.5	9.4e-18	61	147	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t++++ +C ++ ++ k g w ++k++l+H+H+++p Araip.DCT9V 61 KFYRNYAKAAGFSTRVRYTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTSSLNCPTRIYIHTLKdVGAWIISKVVLDHSHPCCP 147 6*************987776..888**********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-15	61	147	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.223	310	346	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.6E-5	312	343	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0046	321	348	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MDHSTSDSQL NLGKVDYEFE SNEVPEPVYL QFMALKPLSV VDDELVPKVG MTFTTLEDAE 60 KFYRNYAKAA GFSTRVRYTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTSSLNCPTR 120 IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH 180 IWVPIYLDHH FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREHAERESD 240 AADFHTVIPC ATKSSIEAQF QDAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYEVGE 300 QVSSSIFNKF LVTYDSVAAE VKCECLLFES RGILCRHALS VLSFEQASQV SPRYILERWS 360 KKELTAILHR AYDNVMAEME ALKAKRKGTS SLSHEDANLE SVNELQNPPR IRTRGRPKNR 420 LGSKLEKQIA NGTKKKKTKV LSEINLFDAA SAAHSNSSQY QGHIMNYQFR VPAAGDNSLG 480 V

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MDHSTSDSQL NLGKVDYEFE SNEVPEPVYL QFMALKPLSV VDDELVPKVG MTFTTLEDAE  60
KFYRNYAKAA GFSTRVRYTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTSSLNCPTR  120
IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH  180
IWVPIYLDHH FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREHAERESD  240
AADFHTVIPC ATKSSIEAQF QDAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYEVGE  300
QVSSSIFNKF LVTYDSVAAE VKCECLLFES RGILCRHALS VLSFEQASQV SPRYILERWS  360
KKELTAILHR AYDNVMAEME ALKAKRKGTS SLSHEDANLE SVNELQNPPR IRTRGRPKNR  420
LGSKLEKQIA NGTKKKKTKV LSEINLFDAA SAAHSNSSQY QGHIMNYQFR VPAAGDNSLG  480
V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.DCT9V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-32	FAR1 family protein