PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DD2QX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 365aa    MW: 40793.8 Da    PI: 7.1772
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DD2QXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.83.3e-201562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+d++k++G g+W+t +++ g++R++k+c++rw +yl
      Araip.DD2QX 15 KGPWTAEEDEKLIDYIKKHGHGSWRTLSKRAGLNRCGKSCRLRWANYL 62
                     79********************************************97 PP
2Myb_DNA-binding56.46.7e-1868112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+ ++++++ +lG++ W++Ia++++ gRt++++k++w+++
      Araip.DD2QX  68 RGKFTPDEERIIINLHSLLGNK-WSKIASHLP-GRTDNEIKNFWNTH 112
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.6121062IPR017930Myb domain
SuperFamilySSF466897.86E-3312109IPR009057Homeodomain-like
SMARTSM007171.3E-161464IPR001005SANT/Myb domain
PfamPF002494.5E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-251669IPR009057Homeodomain-like
CDDcd001671.44E-131762No hitNo description
PROSITE profilePS5129428.13863117IPR017930Myb domain
SMARTSM007172.2E-1767115IPR001005SANT/Myb domain
PfamPF002491.5E-1668112IPR001005SANT/Myb domain
CDDcd001672.36E-1370113No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGRSACCDES SNVKKGPWTA EEDEKLIDYI KKHGHGSWRT LSKRAGLNRC GKSCRLRWAN  60
YLRPDIKRGK FTPDEERIII NLHSLLGNKW SKIASHLPGR TDNEIKNFWN THIRKKLLQM  120
GIDPETHKPR TDFKHLINLT QLLAAGMSSN SGNPMMNMNT PTWGRNPNIA LQGDATSQLA  180
QLQLLQNLLQ IMNGNTFLNM GNNPNFPLGN PSFNNFYPNG SNILQTVEPF GLKSEEYGSK  240
SNPTGLLLSP SDYSNDFFQH GLSTNTQELE CYNKLSNTTN QAEINPLFPA LVASSPVITD  300
GTCSSFNQME NNNSSCCNTA PTSTAQSPNN NSNTIFDDLE KLLQDDETSA SYWKDILEYA  360
LVLVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32151177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DD2QX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016198969.20.0transcription factor MYB39-like
TrEMBLA0A444WVM70.0A0A444WVM7_ARAHY; Uncharacterized protein
STRINGGLYMA09G33870.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-79myb domain protein 9