PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.DH5CE

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 562aa MW: 63525.3 Da PI: 4.3285

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.DH5CE	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00031	347	385	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+ri +++ +Lr+++P + k s Le ++Y++ L Araip.DH5CE 347 RQRIQDCIRQLRTIIPGK---NVKECSIDNLLECSIRYMSFL 385 89**************98...667788888888888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.861	334	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDSENYDLDE FLASISFDCL YDSNPNNPSV SIYELDSLHE PQLSLSDMDH NNGLVLKCNG 60 STKCFTDQDP FFDPLEEQVL YESALTSLCI TNNSMENQHS NQVIMAEADF PSSSEVSKNL 120 LEPIDVSEEF LNFTSVDDIC QWFDPSQEDN NSNTFLEPMQ CDATSFSWKS VMDSYENCLL 180 GSKEPESNLI APAASSADDT TIFECLSEFD FDVPTMLFSD SSIEELLNCE EAICNNPLNN 240 GSSSVLELSS ENNKMEMMEN ISNPMNFTKN LAWFEARNNL TQPVPDLDTT NKIKRKKVQL 300 GLVMDDSHSI KLGETILVPP RKKEEPKKPS KKKDKAGVGS RPRPKDRQRI QDCIRQLRTI 360 IPGKNVKECS IDNLLECSIR YMSFLSSTAH YANKLQEPDK PKLIEQANGV VLQESSVEGS 420 KYCGTWSFEE PHQTLLCPII VEDMSHPGQM LIELLCEEEG FSLEMVDTIK GLGLNILKAK 480 METRNKKLWA RFIVEANRHV TKIDVFWSLL HLVEQKNSSG TGMDSSTNNN KYCNVMNDSS 540 VSRLDKQQQE KESCNLFMSR TE

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDSENYDLDE FLASISFDCL YDSNPNNPSV SIYELDSLHE PQLSLSDMDH NNGLVLKCNG  60
STKCFTDQDP FFDPLEEQVL YESALTSLCI TNNSMENQHS NQVIMAEADF PSSSEVSKNL  120
LEPIDVSEEF LNFTSVDDIC QWFDPSQEDN NSNTFLEPMQ CDATSFSWKS VMDSYENCLL  180
GSKEPESNLI APAASSADDT TIFECLSEFD FDVPTMLFSD SSIEELLNCE EAICNNPLNN  240
GSSSVLELSS ENNKMEMMEN ISNPMNFTKN LAWFEARNNL TQPVPDLDTT NKIKRKKVQL  300
GLVMDDSHSI KLGETILVPP RKKEEPKKPS KKKDKAGVGS RPRPKDRQRI QDCIRQLRTI  360
IPGKNVKECS IDNLLECSIR YMSFLSSTAH YANKLQEPDK PKLIEQANGV VLQESSVEGS  420
KYCGTWSFEE PHQTLLCPII VEDMSHPGQM LIELLCEEEG FSLEMVDTIK GLGLNILKAK  480
METRNKKLWA RFIVEANRHV TKIDVFWSLL HLVEQKNSSG TGMDSSTNNN KYCNVMNDSS  540
VSRLDKQQQE KESCNLFMSR TE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.DH5CE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020998658.1	0.0	transcription factor bHLH157-like
TrEMBL	A0A445APF5	0.0	A0A445APF5_ARAHY; Uncharacterized protein
STRING	GLYMA10G31691.1	1e-125	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6955	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-29	conserved peptide upstream open reading frame 7