PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DI2X4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 284aa    MW: 32227.2 Da    PI: 5.2115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DI2X4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++lv +v+++G  +W++ ++  g+ R++k+c++rw +yl
      Araip.DI2X4 14 KGTWTAEEDKKLVAYVTRYGCWNWRLLPKFAGLERCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding53.74.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE++ ++ +++ lG++ W++Ia+ ++ gRt++++k++w+++l
      Araip.DI2X4  67 RGNYTQEEEDTIITLHQNLGNR-WSLIAANLP-GRTDNEIKNHWHTVL 112
                      899*******************.*********.***********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.641961IPR017930Myb domain
SuperFamilySSF466892.43E-2911108IPR009057Homeodomain-like
SMARTSM007176.6E-101363IPR001005SANT/Myb domain
PfamPF002498.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-231568IPR009057Homeodomain-like
CDDcd001671.33E-81661No hitNo description
PROSITE profilePS5129425.6762116IPR017930Myb domain
SMARTSM007173.4E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567112IPR001005SANT/Myb domain
CDDcd001671.85E-1069112No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVRTPLCDKS GMRKGTWTAE EDKKLVAYVT RYGCWNWRLL PKFAGLERCG KSCRLRWMNY  60
LRPNIKRGNY TQEEEDTIIT LHQNLGNRWS LIAANLPGRT DNEIKNHWHT VLKKRIQDKS  120
SSSSSSSSSG TGKGSRTGKA KASSKVKNNN NNNHDSPTTI MEQDFNSDSS SENSNNNIGG  180
SCDDRHNNSS LSPQPSSSGF SCITTDTETA AINHEDNNLI ILENNNNDYG ELGFFDAYDE  240
PVSEDFWTEP YLTDFSYVPP SSEEYFLNPI WDIEFWGQNS LYLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DI2X4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020964450.10.0myb-related protein Myb4-like
RefseqXP_025669135.10.0transcription factor MYB13
TrEMBLA0A444Y6J50.0A0A444Y6J5_ARAHY; Uncharacterized protein
STRINGXP_007149916.16e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-57myb domain protein 15