PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DN6WY
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 278aa    MW: 31795.2 Da    PI: 5.4027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DN6WYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G+ +W+  ++  g+ R++k+c++rw +yl
      Araip.DN6WY 14 KGTWTPEEDRKLIAYVTRYGSWNWRQLPKFAGLARCGKSCRLRWMNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding58.41.6e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE+  +++++ +lG++ W++Ia++++ gRt++++k++w++ 
      Araip.DN6WY  67 RGNFTQEEEACIIKLHSKLGNR-WSAIAAELP-GRTDNEIKNHWHTT 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-23664IPR009057Homeodomain-like
PROSITE profilePS5129417.257961IPR017930Myb domain
SuperFamilySSF466894.12E-3011108IPR009057Homeodomain-like
SMARTSM007177.6E-111363IPR001005SANT/Myb domain
PfamPF002492.2E-141461IPR001005SANT/Myb domain
CDDcd001675.29E-91661No hitNo description
PROSITE profilePS5129427.3162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2765115IPR009057Homeodomain-like
SMARTSM007171.9E-1766114IPR001005SANT/Myb domain
PfamPF002499.5E-1767111IPR001005SANT/Myb domain
CDDcd001672.11E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVRTPSCDKS GLRKGTWTPE EDRKLIAYVT RYGSWNWRQL PKFAGLARCG KSCRLRWMNY  60
LRPNLKRGNF TQEEEACIIK LHSKLGNRWS AIAAELPGRT DNEIKNHWHT TLKKRFQTNE  120
EESETATKSK PKETTQISAE SNTTTTSPLS PLSSSSEFSS ITSWDQSHNN NNKNNMVLED  180
DDFAFLDGIP NENEELELSS NNSTSSLFDL EKEFGSFLIE PTMMESFWTQ PCVSESDDVS  240
HIPFMPPSSE YFTTLCGSDP WSTPSTTHLY DQHLSLFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121185110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DN6WY
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0990771e-142DQ099077.1 Arachis stenosperma clone AS1RN10F09 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953501.11e-160transcription factor MYB14
RefseqXP_025687547.11e-160transcription factor MYB13
SwissprotQ9SJX85e-61MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445E0F41e-158A0A445E0F4_ARAHY; Uncharacterized protein
STRINGGLYMA06G45547.11e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-58myb domain protein 15
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]