PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DNS1S
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YC
Protein Properties Length: 144aa    MW: 16662.6 Da    PI: 6.2952
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DNS1SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.12.6e-1547137999
        NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  + e++ d k h +P+ ri+ i+ka++   ++s ea  ++ ka e f+ +++   ++++ + +r++l    +a +v++   ++fl d vp+ 
  Araip.DNS1S  47 EEEDEGDAKSHVFPMNRIRTIVKAEDPDLRVSQEAIFVVNKAAEKFLEQFAQDGYVRCVQERRKSLSYKHLAHVVSKQRRYEFLSDFVPET 137
                  467889*****************98777789*********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.03E-1824130IPR009072Histone-fold
PfamPF008084.7E-1559121IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.9E-2359136IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MATRSTAVQK REVESVEQEE EDSTVVSNGR TDGKKPKKSK RNREEVEEED EGDAKSHVFP  60
MNRIRTIVKA EDPDLRVSQE AIFVVNKAAE KFLEQFAQDG YVRCVQERRK SLSYKHLAHV  120
VSKQRRYEFL SDFVPETMKA EDAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DNS1S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025685515.14e-87ribosomal RNA-processing protein 8 isoform X1
TrEMBLA0A445A9W01e-79A0A445A9W0_ARAHY; Uncharacterized protein
STRINGXP_007132235.12e-45(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-28nuclear factor Y, subunit C10