PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.DW1WN

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 219aa MW: 23926 Da PI: 7.2495

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.DW1WN	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	1e-38	13	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p+++r da+ +l yeA r+rdPvyG+v++i++lqqq+ +l+ael ++ Araip.DW1WN 13 PCGACKFLRRKCVKGCIFAPYFDSDQgTSHFAAVHKVFGASNASKLLMRIPPHKRLDAVLTLSYEALSRVRDPVYGCVAHIFALQQQVVNLQAELTYV 110 7*********************9989******************************************************************99 PP DUF260 98 kee 100 +++ Araip.DW1WN 111 QAR 113 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.386	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-37	13	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDCDENNQQR GGPCGACKFL RRKCVKGCIF APYFDSDQGT SHFAAVHKVF GASNASKLLM 60 RIPPHKRLDA VLTLSYEALS RVRDPVYGCV AHIFALQQQV VNLQAELTYV QARLATMHRI 120 PIAAAAASPP TLHSSSSLDH LASSNADLQN ASNNMSMNFD PPPQPPPHST TLESSSFINS 180 SDEPPPPLLL EDGDLQTLAR EFVSRYLPGV RFQPSNNSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	11	114	9	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	11	114	9	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.DW1WN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016186139.1	1e-162	LOB domain-containing protein 19-like
Refseq	XP_025634174.1	1e-162	LOB domain-containing protein 19
Swissprot	O81322	2e-69	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A445E9P0	1e-160	A0A445E9P0_ARAHY; Uncharacterized protein
STRING	XP_004510943.1	1e-95	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1771	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	4e-63	LOB domain-containing protein 31