PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DW2B6
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 226aa    MW: 25346.6 Da    PI: 8.6749
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DW2B6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.52.1e-18133219191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.DW2B6 133 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 219
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-15133219IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTSCSRITSW IETWSFTKTK WKCLRVWQQK RKKQRTTEAT DNPSRQQQQD VPPTSNAPGP  60
NGVNPNVTNG EPIKSEAIDH VIMDHSTSDS QLNAGEVDYE SESNEVPEPL SVVDDEFVSK  120
VGMTFTTLED AGKFYRNYAK AAGFSTRVRC TNRKGNEIKN QLITCSREGK WKSKISPTEK  180
TNPTAGLNCP ARIYIHTLKD VGAWIISKVV LDHSHPCCPS KAEMLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DW2B6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-148HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020992539.14e-97protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020997362.11e-96protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Y6832e-99A0A444Y683_ARAHY; Uncharacterized protein
TrEMBLA0A444YCF01e-99A0A444YCF0_ARAHY; Uncharacterized protein
TrEMBLA0A445A6B82e-98A0A445A6B8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-10FAR1 family protein