PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DX4V4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WOX
Protein Properties Length: 144aa    MW: 16413.3 Da    PI: 9.4108
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DX4V4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.42.8e-143461957
                 HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Araip.DX4V4  3 YRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 46
                 565589************************************97 PP
2Wus_type_Homeobox87.51.4e-282481965
  Wus_type_Homeobox 19 lyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq
        Araip.DX4V4  2 LYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 48
                       9********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.746147IPR001356Homeobox domain
PfamPF000465.6E-12346IPR001356Homeobox domain
SuperFamilySSF466892.15E-8852IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-5951IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MLYRGGMRTP NAQQIEQITA QLGKYGKIEG KNVFYWFQNH KARERQKQKR NSLGLSHTPR  60
TPAAVAATAA TTTIVSSPTF AASLSFETSR GEVIERDHED SPYKKCRSWV FEYMEDQSWS  120
SSSSSSKEEE HKTLELFPLH PEGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DX4V4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484862e-45AC148486.17 Medicago truncatula clone mth2-56d23, complete sequence.
GenBankBT1478642e-45BT147864.1 Medicago truncatula clone JCVI-FLMt-4E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016163087.11e-104WUSCHEL-related homeobox 4
RefseqXP_025606935.11e-104WUSCHEL-related homeobox 4-like
RefseqXP_025660336.11e-104WUSCHEL-related homeobox 4-like
SwissprotQ6X7J92e-40WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A445CY141e-102A0A445CY14_ARAHY; Uncharacterized protein
STRINGXP_007160869.12e-68(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-37WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]