PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.DZ4PL

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 525aa MW: 60408.9 Da PI: 6.8324

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.DZ4PL	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.9	2.7e-07	88	148	2	75
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fYn YAk+ GF r+ +s+++ ++eg+r++++ + e++r+ ++etr+gC+a+++v++ +++k Araip.DZ4PL 88 FYNLYAKMNGFAARRYRSRRNM------------NNEGFRKHNDCE-ERKRELKPETRCGCEAEMRVHEVHNHK 148 9************9988882............568**999.99****************9987654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50966	9.854	288	336	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0084	311	338	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MYAPFQEEGV VEENAASDGD DFEGVGGHSA ESGAEGIDDD VYGDCFYDNW EERGIDRLTD 60 LGCMNWKEIR ADQIKMLHFA DREVAFAFYN LYAKMNGFAA RRYRSRRNMN NEGFRKHNDC 120 EERKRELKPE TRCGCEAEMR VHEVHNHKML EDTLTFMLPG HRMMNAVAIN QMNMMLKVGI 180 RTPQIYASFV QTAGGHENVP FLKRDIHNLK DFVEQFFRCI TQMRSWEAHI DLQSIVGDLV 240 MQTPLHSLER SAANSLTREI FLLFRPMLSR ACTLKVCSCT YTPMCEIYTL SRSRDAQREW 300 QVSHYPNGTF FKCSCMRMES LGIPCDHIVV VLVHMDATEI PSTLVLGRWS KDARSKVRAF 360 MEKGPFCWDS MVNCGSWMLN DLCRELCVVA SNDADQFVEV TQKIRSEISR VKGSVKEIGE 420 RANMVGSYTL EECVRDPNIV RQRTRCRKGS LNHPSVKGVK RCGICRKVGH NRLSCHQRQT 480 RRESESLAAR CSLSGEMYDD DDVYYEDISQ KMSDVLVVIV IYSFI

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MYAPFQEEGV VEENAASDGD DFEGVGGHSA ESGAEGIDDD VYGDCFYDNW EERGIDRLTD  60
LGCMNWKEIR ADQIKMLHFA DREVAFAFYN LYAKMNGFAA RRYRSRRNMN NEGFRKHNDC  120
EERKRELKPE TRCGCEAEMR VHEVHNHKML EDTLTFMLPG HRMMNAVAIN QMNMMLKVGI  180
RTPQIYASFV QTAGGHENVP FLKRDIHNLK DFVEQFFRCI TQMRSWEAHI DLQSIVGDLV  240
MQTPLHSLER SAANSLTREI FLLFRPMLSR ACTLKVCSCT YTPMCEIYTL SRSRDAQREW  300
QVSHYPNGTF FKCSCMRMES LGIPCDHIVV VLVHMDATEI PSTLVLGRWS KDARSKVRAF  360
MEKGPFCWDS MVNCGSWMLN DLCRELCVVA SNDADQFVEV TQKIRSEISR VKGSVKEIGE  420
RANMVGSYTL EECVRDPNIV RQRTRCRKGS LNHPSVKGVK RCGICRKVGH NRLSCHQRQT  480
RRESESLAAR CSLSGEMYDD DDVYYEDISQ KMSDVLVVIV IYSFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.DZ4PL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016165820.2	0.0	protein FAR1-RELATED SEQUENCE 9-like
TrEMBL	A0A445CCF7	0.0	A0A445CCF7_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3613	6	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-09	FAR1-related sequence 3