PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.E2IDH

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 433aa MW: 49258.2 Da PI: 10.0742

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.E2IDH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.8	7.3e-18	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.E2IDH 11 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 97 6*************998776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-15	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.963	236	272	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.4E-4	238	268	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0063	247	274	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MTFTTLEDAE KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN 60 PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN 120 EEADRHIWVP IYLDHHISPG TARLFSSSNN TIIASEAGSK QRENQMLQIF IRSYCVQPNP 180 PLKLSFQDVY THAKFREVQA QLRGKANCIT RLKNSTLGYS VYEVGEQVSS SIFNKFVVTY 240 DSVAAEVKCQ CLLFESRGIL CRHALSMLSF EQVKRRHTHI KSSHDEPLME PRSKRFDQLV 300 FRSQNICKFA SESDELTAIL HRAYDNVMAE MESLKAKRKG TSSLSHEDAN LESVNEFQRP 360 PRIRTRGRPK NRLGSKLDKQ IANATKKKKT KVLSEINLFD AASAVHSNSS QYQAHVMNYQ 420 FRVPAAGDNS LGV

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MTFTTLEDAE KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN  60
PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN  120
EEADRHIWVP IYLDHHISPG TARLFSSSNN TIIASEAGSK QRENQMLQIF IRSYCVQPNP  180
PLKLSFQDVY THAKFREVQA QLRGKANCIT RLKNSTLGYS VYEVGEQVSS SIFNKFVVTY  240
DSVAAEVKCQ CLLFESRGIL CRHALSMLSF EQVKRRHTHI KSSHDEPLME PRSKRFDQLV  300
FRSQNICKFA SESDELTAIL HRAYDNVMAE MESLKAKRKG TSSLSHEDAN LESVNEFQRP  360
PRIRTRGRPK NRLGSKLDKQ IANATKKKKT KVLSEINLFD AASAVHSNSS QYQAHVMNYQ  420
FRVPAAGDNS LGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.E2IDH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-170	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-157	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A444ZXU6	0.0	A0A444ZXU6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-11	far-red elongated hypocotyls 3