PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E2MIX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 376aa    MW: 41496 Da    PI: 4.6499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E2MIXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19115164255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Araip.E2MIX 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDAEARRIRG 164
                  69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.23E-32115173No hitNo description
Gene3DG3DSA:3.30.730.103.2E-32115174IPR001471AP2/ERF domain
PROSITE profilePS5103224.118115172IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22115173IPR016177DNA-binding domain
SMARTSM003801.4E-37115178IPR001471AP2/ERF domain
PfamPF008472.5E-11116164IPR001471AP2/ERF domain
PRINTSPR003671.3E-11116127IPR001471AP2/ERF domain
PRINTSPR003671.3E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MCGGAIISDF IPAAAAVTAR SRRLTAEYLW PDLKKGSSGK RVPKAAVIDL DDDFEADFRE  60
FKDDSDIDID DDEDDAKPFA FAAAKAPKSI SRGAGKSVAV KAQSEKSAKR KRKNQYRGIR  120
QRPWGKWAAE IRDPRKGVRV WLGTFSTAEE AARAYDAEAR RIRGKKAKVN FPEEAPRTPP  180
KRARPNLNAV QPNLSHKFSV GNNMENYGPL DGFEQKPLVN QTANMDSIPE GGNGFTSLTS  240
PDDVTLYFSS DQGSNTFDYS DLRWGEQAPK TPEISSMLSA ALEGESPFEQ DANQQKNLQS  300
ISQDVVPVKD DSSKTLSEEL VDIESDLKFF QMPFLEGSWD DTSLESLLAG DTTQNGENLM  360
NLWSFDDIPS MSGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201141741374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E2MIX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0489300.0JQ048930.1 Arachis hypogaea ethylene-responsive element binding factor 1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205840.10.0ethylene-responsive transcription factor RAP2-12 isoform X1
RefseqXP_016205841.10.0ethylene-responsive transcription factor RAP2-12 isoform X1
RefseqXP_025663145.10.0ethylene-responsive transcription factor RAP2-12 isoform X1
RefseqXP_025663146.10.0ethylene-responsive transcription factor RAP2-12 isoform X1
TrEMBLK0FAV20.0K0FAV2_ARAHY; Ethylene-responsive element binding factor 1
STRINGXP_007139068.11e-178(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.39e-64related to AP2 12