PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E2WUF
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 291aa    MW: 33843.6 Da    PI: 10.0914
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E2WUFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.5e-142751998
                 -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 p+kf++++gg+ +++  ++l+ ++g +W++    ++++g++++++GWkeF++   L+ g ++ F+++g+s+   +v +f+
  Araip.E2WUF  2 PNKFCRKYGGDMPNP--VQLQPPDGTEWRIDW--TNRDGEILFKNGWKEFASFYTLENGHVLWFEYNGTSNI--KVNIFD 75
                 9*******9998776..***************..*******************************9986555..888886 PP
2B3407e-132112891799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   lp  f++ + ++++   +  +     ++W  +liy  +++  +++ +W+ F ++n+Lk+gD+++F+l++r++  ++v+++r+
  Araip.E2WUF 211 NLPVCFFRMYFENTK---QYAILRVGKKQWHATLIYYPNRKNALIS-NWRLFLEENNLKAGDVCIFELINRQGPDFKVHIRRS 289
                  577777777755533...356666788*********9998777666.**********************88777789999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-16184IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.296177IPR003340B3 DNA binding domain
CDDcd100178.46E-10175No hitNo description
Gene3DG3DSA:2.40.330.103.3E-16277IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-11275IPR003340B3 DNA binding domain
SMARTSM010190.022277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-19188289IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-12189288No hitNo description
SuperFamilySSF1019361.63E-16189289IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-5196290IPR003340B3 DNA binding domain
PfamPF023621.6E-10212289IPR003340B3 DNA binding domain
PROSITE profilePS5086310.348235290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MPNKFCRKYG GDMPNPVQLQ PPDGTEWRID WTNRDGEILF KNGWKEFASF YTLENGHVLW  60
FEYNGTSNIK VNIFDMSALE IDYPSNGRIG DDNSVEILDE PPPRRGRGRP KKKVIAEPKQ  120
SRASTSTSKI MKSAIKTKDK DKNPNTQKLK QHVENEKDGQ SEETADLKLP IIQRARPDMD  180
EVIREAKKFK SKNPSFVIKI KQMHQTGSPA NLPVCFFRMY FENTKQYAIL RVGKKQWHAT  240
LIYYPNRKNA LISNWRLFLE ENNLKAGDVC IFELINRQGP DFKVHIRRSH D
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E2WUF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025683523.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A444XB910.0A0A444XB91_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-27B3 family protein