 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.EC30Y | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
| Family | ARR-B | ||||||||
| Protein Properties | Length: 678aa MW: 74409.6 Da PI: 6.3156 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 90.4 | 1.6e-28 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Araip.EC30Y 213 KPRVVWSVELHQQFVAAVDQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
79*******************.********************************8 PP
| |||||||
| 2 | Response_reg | 78 | 3.3e-26 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95
vl+vdD+p+ +++l+++l+ y ev+ + ++e+al+ll++++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + + + Ga
Araip.EC30Y 35 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNTAEKALTLLRKNKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKNVVMKGVTHGAC 129
89*********************.***************999999**********************6654.8************************ PP
EEEESS--HHHHHH CS
Response_reg 96 dflsKpfdpeelvk 109
d+l Kp+ +e+l +
Araip.EC30Y 130 DYLIKPVRIEALKN 143
**********9986 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 7.6E-184 | 10 | 670 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 9.53E-36 | 32 | 156 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 1.7E-42 | 32 | 178 | No hit | No description |
| SMART | SM00448 | 2.1E-30 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.975 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 3.5E-23 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 2.69E-27 | 36 | 148 | No hit | No description |
| SuperFamily | SSF46689 | 6.63E-20 | 210 | 270 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 11.518 | 210 | 269 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 5.3E-30 | 212 | 271 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 7.3E-25 | 213 | 266 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 2.9E-7 | 215 | 265 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 678 aa Download sequence Send to blast |
MNLSNGRGSM STVTSGAAVK SADAVSDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT 60 KCNTAEKALT LLRKNKNGFD IVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKNVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KRKNEWRDTE QSGSAEEGDR QQKASDDADY 180 SSSANESNWR NSKKRRDEEE EAEERDDTST LKKPRVVWSV ELHQQFVAAV DQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQNN MNSSFMNPQD ATFGTISSIN 300 GIDLQTLAAA GQLPAQSLAT LQAAGLGRST PKAGLPMPIM DQRNLFSFEN PRLRFSEGQQ 360 QQQHLSNSKP VNLLHGIPTN MEPKQLASLH QSSQPLGNMT VRVNASTQSN PLLMQMAQSQ 420 PRGHMLSENT GPHLPRLPSS LGQPSASNGT SNALMGRNGI AGSTRAPGYN PISQSSSMMN 480 FPINQTTEMP ISSFPLGSTP GISSITTKGS FQEEVTSGIK RAGGFVPNYD IFSELKKPLD 540 WEVSNPSLTY NAASQHANPL HGNIDVSPSV LVQQSFSSNQ QTGQSRDANT MIVKPIFSAS 600 ESMEQGTLQN QHLNTLVTDN SIRVKTERIP DASSQTNFYP EHYGQEDLMS ALLKQQEGIG 660 PAENDFDFDG YSLDNVPV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-22 | 212 | 272 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.EC30Y |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016197834.1 | 0.0 | two-component response regulator ARR1 | ||||
| Refseq | XP_025630159.1 | 0.0 | two-component response regulator ARR1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A445AWJ7 | 0.0 | A0A445AWJ7_ARAHY; Two-component response regulator | ||||
| STRING | GLYMA07G37220.1 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3958 | 34 | 58 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|