PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.EC4LT

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 198aa MW: 21813 Da PI: 8.9987

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.EC4LT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.5	3.2e-15	80	170	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f vl++s+v +s+++ p k + ++ + e t+ g+sW++ ++ +gr ++ +GW++Fvkan L egD +vF+l+ +s+++ v+ v Araip.EC4LT 80 FHVVLSKSHVRRSCLMG-PSKDLIDIlP-SA-E--VPTVLKCGGESWDMVYR-GHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEV 170 66788888999888555.8888877741.22.2..34777889******3.45566799***********************99888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.82E-17	75	174	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.9E-18	75	174	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.44E-17	78	174	No hit	No description
PROSITE profile	PS50863	11.984	79	176	IPR003340	B3 DNA binding domain
SMART	SM01019	1.9E-9	80	176	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-13	80	169	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
SLQQHRKHRE VVGGAFRKFW RVLPVDNVTP LPTASSMSSP GSSSTSRVSV EGQAPLPKPA 60 DPAANLSSNE IAPLSRNPFF HVVLSKSHVR RSCLMGPSKD LIDILPSAEV PTVLKCGGES 120 WDMVYRGHAP GRKFFDGGWR KFVKANCLVE GDACVFELMA NSDEKIVFEV QILRGDLPEV 180 FFKRDRIGAS EQKPIVID

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.EC4LT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016191585.1	1e-116	B3 domain-containing protein Os04g0386900-like
Refseq	XP_025640998.1	1e-116	B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A445AB11	1e-107	A0A445AB11_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	5e-11	related to vernalization1 1