PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.EDM7N

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TCP

Protein Properties

Length: 256aa MW: 29056.8 Da PI: 9.9197

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.EDM7N	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.5	8.5e-29	56	170	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................s 66 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k i++l+ + s Araip.EDM7N 56 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLDATKLDIDKLPPLhfpqpcfqppqtlfphllhdpssfwkprfweldsS 153 79*************************************************************88888777777777777655543333333333221 PP TCP 67 sssaseceaesssssasnsssg.........k 89 as+sss+ Araip.EDM7N 154 ---------------ASSSSSSrflkgkdlmT 170 ...............22222222222211210 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-26	57	170	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.442	57	115	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MMMETKEEGM IIEENKKKSN ENDKFTLKGS AAASSSTRQW SAFRNPRIVR VSRSFGGKDR 60 HSKVCTIRGL RDRRIRLSVP TAIQLYDLQD KLGLSQPSKV IDWLLDATKL DIDKLPPLHF 120 PQPCFQPPQT LFPHLLHDPS SFWKPRFWEL DSSASSSSSS RFLKGKDLMT TMPSDNNNNK 180 AKWIFKSNNA DHENQEFGGG YTTQRLFPME TQTTTNNNPF QMGDYYGSYP MMNNGGLMQL 240 NHLSSLQVGP SGSSQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-18	62	116	1	55	Putative transcription factor PCF6
5zkt_B	4e-18	62	116	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00008	PBM	Transfer from 496250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.EDM7N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020970331.1	1e-176	transcription factor TCP5-like, partial
Swissprot	Q9FME3	1e-49	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A444X7J2	1e-173	A0A444X7J2_ARAHY; Uncharacterized protein
STRING	GLYMA04G32324.1	2e-66	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF932	34	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	6e-50	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]