PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EEY9H
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 260aa    MW: 29730.2 Da    PI: 5.3708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EEY9HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-093174147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+ eEd +l ++v+ +G g+W++ ar  g+++      +rw++y
      Araip.EEY9H 31 KGPWSVEEDVILSNYVATHGDGRWNALARSAGTNL---YSMLRWLNY 74
                     79*****************************9443...337777777 PP
2Myb_DNA-binding46.58.5e-1581124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T  E+  ++d++ ++G++ W++Ia++++ gRt++++k++w++
      Araip.EEY9H  81 RGNITLHEQITILDLHSRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 124
                      78999*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.9332675IPR017877Myb-like domain
SuperFamilySSF466896.94E-2330122IPR009057Homeodomain-like
SMARTSM007174.2E-53077IPR001005SANT/Myb domain
PfamPF002492.1E-73175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-123282IPR009057Homeodomain-like
PROSITE profilePS5129421.78476130IPR017930Myb domain
SMARTSM007175.6E-1380128IPR001005SANT/Myb domain
PfamPF002499.4E-1381124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2183129IPR009057Homeodomain-like
CDDcd001672.49E-985124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEANKKNKVK KLGSGSIEEE EVENDKGMIR KGPWSVEEDV ILSNYVATHG DGRWNALARS  60
AGTNLYSMLR WLNYLRPDVR RGNITLHEQI TILDLHSRWG NRWSKIAEHL PGRTDNEIKN  120
YWRTRVSKQA RQLNCDVNSK IFRDALRYVW MPLLQERLQS NSQMEHPNAT QAYSSDSSSS  180
ASLGIQQFCS ESDQQVMSNH GVLVHSIVED EPGICPSMNN ETFEYTNIPL GDSGDLMLES  240
LCNNDDNIYG FCHDFVMTLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-18281301105C-Myb DNA-Binding Domain
1msf_C3e-18281301105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EEY9H
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207555.10.0transcription factor MYB108-like
RefseqXP_025663383.10.0transcription factor JAMYB
SwissprotQ2QZJ81e-68JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A444YIW20.0A0A444YIW2_ARAHY; Uncharacterized protein
STRINGGLYMA10G01330.12e-75(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-65myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]