PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EG0VP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 400aa    MW: 44244.8 Da    PI: 6.7872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EG0VPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.2e-092381248
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     l ++v ++G g+W+ + +  g+ R++k+c++rw ++l
      Araip.EG0VP  2 LREYVMKYGEGNWNCVQKNSGLARCGKSCRLRWANHL 38
                     789******************************9986 PP
2Myb_DNA-binding50.16.3e-164487146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g++++eE++l+v+++++lG++ W++ a+ ++ gRt++++k++w++
      Araip.EG0VP 44 KGSFSKEEEDLIVQLHAKLGNK-WARMAAQLP-GRTDNEIKNFWNT 87
                     799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8140IPR001005SANT/Myb domain
CDDcd001672.46E-5138No hitNo description
SuperFamilySSF466891.41E-22185IPR009057Homeodomain-like
PROSITE profilePS512949.989138IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-16245IPR009057Homeodomain-like
PfamPF002492.9E-7238IPR001005SANT/Myb domain
PROSITE profilePS5129423.6393993IPR017930Myb domain
SMARTSM007171.1E-154391IPR001005SANT/Myb domain
PfamPF002496.8E-154487IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-244691IPR009057Homeodomain-like
CDDcd001672.07E-114687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MLREYVMKYG EGNWNCVQKN SGLARCGKSC RLRWANHLRP NLKKGSFSKE EEDLIVQLHA  60
KLGNKWARMA AQLPGRTDNE IKNFWNTRVK RCQRAGLPLY PPQVLHEANL IAHPSTNQQN  120
PPHSSCLSNN NPQPYPQFKF PNENPNITNS GNLGFPLSPI SITSSLFHQS YNNVNNSSNN  180
DYHLGSYNYG QSSPPLSSTT PTSSHASGNN GYLIGGGASN MATNGDGGRS GVAPLSPPQE  240
NGGGGLLGAV LVEAQSLCNN NDKSKSDNED STASQVLSHK RKYIVTTEEC AKEEETNNVV  300
VESDTKSNGN TINKIHKVDL YSSPFSTGNK QTTEDELEEI NTMDDDLFGL LKNFQEMPVP  360
DWYHKRGQPL ELETQQDASL GPIDQAFSAH DSFWRNMPKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-2369119103C-Myb DNA-Binding Domain
1msf_C2e-2369119103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EG0VP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016191866.10.0transcription factor MYB97
RefseqXP_025643241.10.0transcription factor MYB97-like
TrEMBLA0A445A5X60.0A0A445A5X6_ARAHY; Uncharacterized protein
STRINGGLYMA13G38521.18e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-58myb domain protein 101