PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EHU5C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 476aa    MW: 55633.6 Da    PI: 10.049
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EHU5CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.52.2e-181297291
         FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                 fY +YAk++GFs  ++++k   +n++it + +vCs+ g+r+++ +     ++t+++++ +Cka++ vk++k+ k+++t  + +HnH+++p
  Araip.EHU5C 12 FYTNYAKRIGFSWNIRTTKWD-QNRQITYQILVCSRAGYRRSQIDP---LKKTNPTSEQNCKARIIVKRDKKMKYVLTFANIQHNHAISP 97
                 9**************998777.6777***************99877...999**********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-161297IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAFSSVKDYE TFYTNYAKRI GFSWNIRTTK WDQNRQITYQ ILVCSRAGYR RSQIDPLKKT  60
NPTSEQNCKA RIIVKRDKKM KYVLTFANIQ HNHAISPSMA KTLRKNRKLS LHAKWIAEIN  120
DQAGVTIRNT YQSLATTAGG YDKLTFTQKD LWNHVARSVR VIEEEGLYEE RDRWVLIFLS  180
NSFWTGMSNT QRSESMHSFM KGYLTSKSNL QQFVTQYDNC LANKAQQEYE LDAASFNTII  240
SCATASAIEK HLMSFKRSLE QRLISFQQKK HEEGYVVTYK VIEEIENVDK MFDVTYKVSF  300
DSSTSDVSFQ CHLFESKGIL CRHTLSVLGL ERVKKLPNKY ILDRWKKTLK RKHSSIKCSH  360
DPSRLEPVKK RYDEMCKQFY DIAKVAAASE ELTETVHRIL DSIWVMLVEP KASSMDNVDN  420
QNLNEVDENA NDLEIHNPQQ VSRKGRRRKK RLQSTVEKIV KQGRKKHTKN ICYMLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442450RKGRRRKKR
2444451GRRRKKRL
3444452GRRRKKRLQ
4445450RRRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EHU5C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445AGC70.0A0A445AGC7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-26far-red elongated hypocotyls 3